iPhylo
IPhylo Blogspot. Blog by Rod Page on biodiversity informatics, taxonomy, systematics, phylogeny, knowledge graphs, and other topics..
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Best pages on Iphylo.blogspot.com
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Blog by Rod Page on biodiversity informatics, taxonomy, systematics, phylogeny, knowledge graphs, and other topics.
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iPhylo: Biodiversity informatics in charts
iPhylo Rants, raves (and occasionally considered opinions) on phyloinformatics, taxonomy, and biodiversity informatics. For more ranty and less considered opinions, see my Twitter feed. Friday, Sept...
Iphylo.blogspot.com news digest
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23 days
Notes on transforming BHL images
I’ve been down this road before, e.g. BHL, DjVu, and reading the f*cking manual and Demo of full-text indexing of BHL using CouchDB hosted by Cloudant, but I’m revisiting converting BHL page scans to black and white images, partly to clean them up, to...
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1 month
These are notes to myself on using Hugging Face AutoTrain. The first version of this had a very nice interface where you could simply upload a folder of images and train a model. It was limited in the range of tasks and models, but made up for that in...
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2 months
Problems with the DataCite Data Citation Corpus
DataCite have released the Data Citation Corpus, together with a dashboard that summarises the corpus. This is billed as:
A trusted central aggregate of all data citations to further our understanding of data usage and advance meaningful data metrics
The goal is to build a citation database between scholarly articles and data, such as datasets in repositories, sequences in GenBank, protein structures in PDB, etc. Access to the corpus can be obtained by submitting a form, then having a (very pleasant... -
5 months
It's 2023 - why are we still not sharing phylogenies?
A quick note to support a recent Twitter thread https://twitter.com/rdmpage/status/1729816558866718796?s=61&t=nM4XCRsGtE7RLYW3MyIpMA
The article “Diversification of flowering plants in space and time” by Dimitrov et al. describes a genus-level phylogeny for 14,244 flowering plant genera. This is a major achievement, and yet neither the tree nor the data supporting that tree are readily...
Domain history
Web host: | Google LLC |
Registrar: | MarkMonitor Inc. |
Registrant: | Google LLC |
Updated: | June 29, 2023 |
Expires: | July 31, 2024 |
Created: | July 31, 2000 |
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