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Forum.genabel.org news digest

  • 6 years

    ProbABEL • Is paxoxph function suitable for small dataset?

    Hello,
    I was trying to run pacoxph for a small dataset (e.g. N=30). But all the results were "nan".
    my code,

  • 6 years

    GenABEL • Discontinuation of the GenABEL project

    Dear GenABEL community, dear friends,
    PolyOmica, the company which has provided financial support to the GenABEL Project since 2011, has announced that it will discontinue their support this year. We would like to thank PolyOmica for its generous support of the Project, which made it possible...

  • 6 years

    ProbABEL • Phenotype file and dose or probability file did not match at line

    Hello all,
    I guess this is a known bug, that throws when running either the palinear or palogisitc. I tried to compare the phenotype file and genotype file, the sampleID matches well (ID in phenotype file same as genotypefile (line number -1) taking the header...

  • 7 years

    GenABEL • Re: [SOLVED] mach2databel - Error in dimnames..

    I managed to find the solution.
    Which was not the id's in the .dose-files but the markers (positions) in the info-files.
    After imputation, SNPs with several alleles, or with additional indels or deletions, are separated into different rows in the .vcf-files, meaning that each "SNP" in the .mach.info-file might appear several times....

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